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Shashank Suhas
seminar-breakout
Commits
68e8d9eb
Commit
68e8d9eb
authored
Dec 09, 2017
by
Yuxin Wu
Browse files
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MultiProcessMapData with strict (#414)
parent
be3a07a1
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75 deletions
+99
-75
.github/ISSUE_TEMPLATE.md
.github/ISSUE_TEMPLATE.md
+2
-8
tensorpack/dataflow/prefetch.py
tensorpack/dataflow/prefetch.py
+97
-67
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.github/ISSUE_TEMPLATE.md
View file @
68e8d9eb
Bug Reports/Feature Requests/Usage Questions Only:
Bug Reports/Feature Requests/Usage Questions Only:
Bug
Reports
: PLEASE always include
Bug
reports or other problems with code
: PLEASE always include
1.
What you did. (command you run and changes you made if using examples; post or describe your code if not)
1.
What you did. (command you run and changes you made if using examples; post or describe your code if not)
2.
What you observed, e.g.
logs
.
2.
What you observed, e.g.
as much as logs possible
.
3.
What you expected, if not obvious.
3.
What you expected, if not obvious.
4.
Your environment (TF version, cudnn version, number & type of GPUs), if it matters.
4.
Your environment (TF version, cudnn version, number & type of GPUs), if it matters.
5.
About efficiency, PLEASE first read http://tensorpack.readthedocs.io/en/latest/tutorial/performance-tuning.html
5.
About efficiency, PLEASE first read http://tensorpack.readthedocs.io/en/latest/tutorial/performance-tuning.html
...
@@ -14,10 +14,4 @@ Feature Requests:
...
@@ -14,10 +14,4 @@ Feature Requests:
It may not have to be added to tensorpack unless you have a good reason.
It may not have to be added to tensorpack unless you have a good reason.
3.
Note that we don't implement papers at others' requests.
3.
Note that we don't implement papers at others' requests.
Usage Questions, e.g.:
"How do I do [this specific thing] in tensorpack?"
"Why certain examples need to be written in this way?"
We don't answer general machine learning questions like:
"I want to do [this machine learning task]. What specific things do I need to do?"
You can also use gitter (https://gitter.im/tensorpack/users) for more casual discussions.
You can also use gitter (https://gitter.im/tensorpack/users) for more casual discussions.
tensorpack/dataflow/prefetch.py
View file @
68e8d9eb
...
@@ -67,20 +67,11 @@ def _zmq_catch_error(name):
...
@@ -67,20 +67,11 @@ def _zmq_catch_error(name):
class
_MultiProcessZMQDataFlow
(
DataFlow
):
class
_MultiProcessZMQDataFlow
(
DataFlow
):
def
__init__
(
self
,
ds
):
def
__init__
(
self
):
assert
os
.
name
!=
'nt'
,
"ZMQ IPC doesn't support windows!"
assert
os
.
name
!=
'nt'
,
"ZMQ IPC doesn't support windows!"
self
.
_reset_done
=
False
self
.
_reset_done
=
False
self
.
_procs
=
[]
self
.
_procs
=
[]
self
.
ds
=
ds
try
:
self
.
_size
=
ds
.
size
()
except
NotImplementedError
:
self
.
_size
=
-
1
def
size
(
self
):
return
self
.
ds
.
size
()
def
reset_state
(
self
):
def
reset_state
(
self
):
"""
"""
All forked dataflows are reset **once and only once** in spawned processes.
All forked dataflows are reset **once and only once** in spawned processes.
...
@@ -265,10 +256,17 @@ class PrefetchDataZMQ(_MultiProcessZMQDataFlow):
...
@@ -265,10 +256,17 @@ class PrefetchDataZMQ(_MultiProcessZMQDataFlow):
if
nr_proc
>
1
:
if
nr_proc
>
1
:
logger
.
info
(
"[PrefetchDataZMQ] Will fork a dataflow more than one times. "
logger
.
info
(
"[PrefetchDataZMQ] Will fork a dataflow more than one times. "
"This assumes the datapoints are i.i.d."
)
"This assumes the datapoints are i.i.d."
)
try
:
self
.
_size
=
ds
.
size
()
except
NotImplementedError
:
self
.
_size
=
-
1
def
_recv
(
self
):
def
_recv
(
self
):
return
loads
(
self
.
socket
.
recv
(
copy
=
False
)
.
bytes
)
return
loads
(
self
.
socket
.
recv
(
copy
=
False
)
.
bytes
)
def
size
(
self
):
return
self
.
ds
.
size
()
def
get_data
(
self
):
def
get_data
(
self
):
with
self
.
_guard
,
_zmq_catch_error
(
'PrefetchDataZMQ'
):
with
self
.
_guard
,
_zmq_catch_error
(
'PrefetchDataZMQ'
):
for
k
in
itertools
.
count
():
for
k
in
itertools
.
count
():
...
@@ -311,7 +309,59 @@ class PrefetchOnGPUs(PrefetchDataZMQ):
...
@@ -311,7 +309,59 @@ class PrefetchOnGPUs(PrefetchDataZMQ):
proc
.
start
()
proc
.
start
()
class
MultiThreadMapData
(
ProxyDataFlow
):
class
_ParallelMapData
(
ProxyDataFlow
):
def
__init__
(
self
,
ds
,
buffer_size
):
super
(
_ParallelMapData
,
self
)
.
__init__
(
ds
)
assert
buffer_size
>
0
,
buffer_size
self
.
_buffer_size
=
buffer_size
def
_recv
(
self
):
pass
def
_send
(
self
,
dp
):
pass
def
_recv_filter_none
(
self
):
ret
=
self
.
_recv
()
assert
ret
is
not
None
,
\
"[{}] Map function cannot return None when strict mode is used."
.
format
(
type
(
self
)
.
__name__
)
return
ret
def
_fill_buffer
(
self
):
try
:
for
_
in
range
(
self
.
_buffer_size
):
dp
=
next
(
self
.
_iter
)
self
.
_send
(
dp
)
except
StopIteration
:
logger
.
error
(
"[{}] buffer_size cannot be larger than the size of the DataFlow!"
.
format
(
type
(
self
)
.
__name__
))
raise
def
get_data_non_strict
(
self
):
for
dp
in
self
.
_iter
:
self
.
_send
(
dp
)
yield
self
.
_recv
()
self
.
_iter
=
self
.
ds
.
get_data
()
# refresh
for
_
in
range
(
self
.
_buffer_size
):
self
.
_send
(
next
(
self
.
_iter
))
yield
self
.
_recv
()
def
get_data_strict
(
self
):
for
dp
in
self
.
_iter
:
self
.
_send
(
dp
)
yield
self
.
_recv_filter_none
()
self
.
_iter
=
self
.
ds
.
get_data
()
# refresh
# first clear the buffer, then fill
for
k
in
range
(
self
.
_buffer_size
):
dp
=
self
.
_recv_filter_none
()
if
k
==
self
.
_buffer_size
-
1
:
self
.
_fill_buffer
()
yield
dp
class
MultiThreadMapData
(
_ParallelMapData
):
"""
"""
Same as :class:`MapData`, but start threads to run the mapping function.
Same as :class:`MapData`, but start threads to run the mapping function.
This is useful when the mapping function is the bottleneck, but you don't
This is useful when the mapping function is the bottleneck, but you don't
...
@@ -367,11 +417,10 @@ class MultiThreadMapData(ProxyDataFlow):
...
@@ -367,11 +417,10 @@ class MultiThreadMapData(ProxyDataFlow):
buffer_size (int): number of datapoints in the buffer
buffer_size (int): number of datapoints in the buffer
strict (bool): use "strict mode", see notes above.
strict (bool): use "strict mode", see notes above.
"""
"""
super
(
MultiThreadMapData
,
self
)
.
__init__
(
ds
)
super
(
MultiThreadMapData
,
self
)
.
__init__
(
ds
,
buffer_size
)
self
.
_strict
=
strict
self
.
_strict
=
strict
self
.
nr_thread
=
nr_thread
self
.
nr_thread
=
nr_thread
self
.
buffer_size
=
buffer_size
self
.
map_func
=
map_func
self
.
map_func
=
map_func
self
.
_threads
=
[]
self
.
_threads
=
[]
self
.
_evt
=
None
self
.
_evt
=
None
...
@@ -398,43 +447,20 @@ class MultiThreadMapData(ProxyDataFlow):
...
@@ -398,43 +447,20 @@ class MultiThreadMapData(ProxyDataFlow):
# only call once, to ensure inq+outq has a total of buffer_size elements
# only call once, to ensure inq+outq has a total of buffer_size elements
self
.
_fill_buffer
()
self
.
_fill_buffer
()
def
_fill_buffer
(
self
):
n
=
self
.
buffer_size
-
self
.
_in_queue
.
qsize
()
-
self
.
_out_queue
.
qsize
()
assert
n
>=
0
,
n
if
n
==
0
:
return
try
:
for
_
in
range
(
n
):
self
.
_in_queue
.
put
(
next
(
self
.
_iter
))
except
StopIteration
:
logger
.
error
(
"[MultiThreadMapData] buffer_size cannot be larger than the size of the DataFlow!"
)
raise
def
_recv
(
self
):
def
_recv
(
self
):
ret
=
self
.
_out_queue
.
get
()
return
self
.
_out_queue
.
get
()
if
ret
is
None
:
assert
not
self
.
_strict
,
\
def
_send
(
self
,
dp
):
"[MultiThreadMapData] Map function cannot return None when strict mode is used."
self
.
_in_queue
.
put
(
dp
)
return
ret
def
get_data
(
self
):
def
get_data
(
self
):
with
self
.
_guard
:
with
self
.
_guard
:
for
dp
in
self
.
_iter
:
self
.
_in_queue
.
put
(
dp
)
yield
self
.
_recv
()
self
.
_iter
=
self
.
ds
.
get_data
()
if
self
.
_strict
:
if
self
.
_strict
:
# first call get() to clear the queues, then fill
for
dp
in
self
.
get_data_strict
():
for
k
in
range
(
self
.
buffer_size
):
dp
=
self
.
_recv
()
if
k
==
self
.
buffer_size
-
1
:
self
.
_fill_buffer
()
yield
dp
yield
dp
else
:
else
:
for
_
in
range
(
self
.
buffer_size
):
for
dp
in
self
.
get_data_non_strict
():
self
.
_in_queue
.
put
(
next
(
self
.
_iter
))
yield
dp
yield
self
.
_recv
()
def
__del__
(
self
):
def
__del__
(
self
):
if
self
.
_evt
is
not
None
:
if
self
.
_evt
is
not
None
:
...
@@ -447,10 +473,20 @@ class MultiThreadMapData(ProxyDataFlow):
...
@@ -447,10 +473,20 @@ class MultiThreadMapData(ProxyDataFlow):
ThreadedMapData
=
MultiThreadMapData
ThreadedMapData
=
MultiThreadMapData
class
MultiProcessMapDataZMQ
(
_MultiProcessZMQDataFlow
):
class
MultiProcessMapDataZMQ
(
_
ParallelMapData
,
_
MultiProcessZMQDataFlow
):
"""
"""
Same as :class:`MapData`, but start processes to run the mapping function,
Same as :class:`MapData`, but start processes to run the mapping function,
and communicate with ZeroMQ pipe.
and communicate with ZeroMQ pipe.
Note:
1. Processes run in parallel and can take different time to run the
mapping function. Therefore the order of datapoints won't be
preserved, and datapoints from one pass of `df.get_data()` might get
mixed with datapoints from the next pass.
You can use **strict mode**, where `MultiProcessMapData.get_data()`
is guranteed to produce the exact set which `df.get_data()`
produces. Although the order of data still isn't preserved.
"""
"""
class
_Worker
(
mp
.
Process
):
class
_Worker
(
mp
.
Process
):
def
__init__
(
self
,
identity
,
map_func
,
pipename
,
hwm
):
def
__init__
(
self
,
identity
,
map_func
,
pipename
,
hwm
):
...
@@ -472,30 +508,32 @@ class MultiProcessMapDataZMQ(_MultiProcessZMQDataFlow):
...
@@ -472,30 +508,32 @@ class MultiProcessMapDataZMQ(_MultiProcessZMQDataFlow):
dp
=
self
.
map_func
(
dp
)
dp
=
self
.
map_func
(
dp
)
socket
.
send
(
dumps
(
dp
),
copy
=
False
)
socket
.
send
(
dumps
(
dp
),
copy
=
False
)
def
__init__
(
self
,
ds
,
nr_proc
,
map_func
,
buffer_size
=
200
):
def
__init__
(
self
,
ds
,
nr_proc
,
map_func
,
buffer_size
=
200
,
strict
=
False
):
"""
"""
Args:
Args:
ds (DataFlow): the dataflow to map
ds (DataFlow): the dataflow to map
nr_proc(int): number of threads to use
nr_proc(int): number of threads to use
map_func (callable): datapoint -> datapoint | None
map_func (callable): datapoint -> datapoint | None
buffer_size (int): number of datapoints in the buffer
buffer_size (int): number of datapoints in the buffer
strict (bool): use "strict mode", see notes above.
"""
"""
super
(
MultiProcessMapDataZMQ
,
self
)
.
__init__
(
ds
)
_ParallelMapData
.
__init__
(
self
,
ds
,
buffer_size
)
_MultiProcessZMQDataFlow
.
__init__
(
self
)
self
.
nr_proc
=
nr_proc
self
.
nr_proc
=
nr_proc
self
.
map_func
=
map_func
self
.
map_func
=
map_func
self
.
buffer_size
=
buffer_size
self
.
_strict
=
strict
self
.
_procs
=
[]
self
.
_procs
=
[]
self
.
_guard
=
DataFlowReentrantGuard
()
self
.
_guard
=
DataFlowReentrantGuard
()
def
_reset_once
(
self
):
def
_reset_once
(
self
):
self
.
context
=
zmq
.
Context
()
self
.
context
=
zmq
.
Context
()
self
.
socket
=
self
.
context
.
socket
(
zmq
.
ROUTER
)
self
.
socket
=
self
.
context
.
socket
(
zmq
.
ROUTER
)
self
.
socket
.
set_hwm
(
self
.
buffer_size
*
2
)
self
.
socket
.
set_hwm
(
self
.
_
buffer_size
*
2
)
pipename
=
_get_pipe_name
(
'dataflow-map'
)
pipename
=
_get_pipe_name
(
'dataflow-map'
)
_bind_guard
(
self
.
socket
,
pipename
)
_bind_guard
(
self
.
socket
,
pipename
)
self
.
_proc_ids
=
[
u'{}'
.
format
(
k
)
.
encode
(
'utf-8'
)
for
k
in
range
(
self
.
nr_proc
)]
self
.
_proc_ids
=
[
u'{}'
.
format
(
k
)
.
encode
(
'utf-8'
)
for
k
in
range
(
self
.
nr_proc
)]
worker_hwm
=
int
(
self
.
buffer_size
*
2
//
self
.
nr_proc
)
worker_hwm
=
int
(
self
.
_
buffer_size
*
2
//
self
.
nr_proc
)
self
.
_procs
=
[
MultiProcessMapDataZMQ
.
_Worker
(
self
.
_procs
=
[
MultiProcessMapDataZMQ
.
_Worker
(
self
.
_proc_ids
[
k
],
self
.
map_func
,
pipename
,
worker_hwm
)
self
.
_proc_ids
[
k
],
self
.
map_func
,
pipename
,
worker_hwm
)
for
k
in
range
(
self
.
nr_proc
)]
for
k
in
range
(
self
.
nr_proc
)]
...
@@ -507,14 +545,8 @@ class MultiProcessMapDataZMQ(_MultiProcessZMQDataFlow):
...
@@ -507,14 +545,8 @@ class MultiProcessMapDataZMQ(_MultiProcessZMQDataFlow):
self
.
_start_processes
()
self
.
_start_processes
()
self
.
_fill_buffer
()
self
.
_fill_buffer
()
def
_fill_buffer
(
self
):
def
reset_state
(
self
):
# Filling the buffer.
_MultiProcessZMQDataFlow
.
reset_state
(
self
)
try
:
for
_
in
range
(
self
.
buffer_size
):
self
.
_send
(
next
(
self
.
_iter
))
except
StopIteration
:
logger
.
error
(
"[MultiProcessMapData] buffer_size cannot be larger than the size of the DataFlow!"
)
raise
def
_send
(
self
,
dp
):
def
_send
(
self
,
dp
):
# round-robin assignment
# round-robin assignment
...
@@ -529,14 +561,12 @@ class MultiProcessMapDataZMQ(_MultiProcessZMQDataFlow):
...
@@ -529,14 +561,12 @@ class MultiProcessMapDataZMQ(_MultiProcessZMQDataFlow):
def
get_data
(
self
):
def
get_data
(
self
):
with
self
.
_guard
,
_zmq_catch_error
(
'MultiProcessMapData'
):
with
self
.
_guard
,
_zmq_catch_error
(
'MultiProcessMapData'
):
for
dp
in
self
.
_iter
:
if
self
.
_strict
:
self
.
_send
(
dp
)
for
dp
in
self
.
get_data_strict
():
yield
self
.
_recv
()
yield
dp
else
:
self
.
_iter
=
self
.
ds
.
get_data
()
# refresh
for
dp
in
self
.
get_data_non_strict
():
for
_
in
range
(
self
.
buffer_size
):
yield
dp
self
.
_send
(
next
(
self
.
_iter
))
yield
self
.
_recv
()
MultiProcessMapData
=
MultiProcessMapDataZMQ
# alias
MultiProcessMapData
=
MultiProcessMapDataZMQ
# alias
...
@@ -549,13 +579,13 @@ if __name__ == '__main__':
...
@@ -549,13 +579,13 @@ if __name__ == '__main__':
def
get_data
(
self
):
def
get_data
(
self
):
for
k
in
range
(
self
.
_size
):
for
k
in
range
(
self
.
_size
):
yield
[
0
]
yield
[
k
]
def
size
(
self
):
def
size
(
self
):
return
self
.
_size
return
self
.
_size
ds
=
Zero
(
300
)
ds
=
Zero
(
300
)
ds
=
MultiProcessMapData
(
ds
,
3
,
lambda
x
:
[
x
[
0
]
+
1
])
ds
=
MultiProcessMapData
(
ds
,
3
,
lambda
x
:
[
x
[
0
]
+
1
]
,
strict
=
True
)
ds
.
reset_state
()
ds
.
reset_state
()
for
k
in
ds
.
get_data
():
for
k
in
ds
.
get_data
():
print
(
"Bang!"
,
k
)
print
(
"Bang!"
,
k
)
...
...
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