Renumber CHECKPOINT_* flags.
Commit 7dbb6069 added a new CHECKPOINT_FLUSH_ALL flag. As that commit needed to be backpatched I didn't change the numeric values of the existing flags as that could lead to nastly problems if any external code issued checkpoints. That's not a concern on master, so renumber them there. Also add a comment about CHECKPOINT_FLUSH_ALL above CreateCheckPoint().
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